Mini Mushroom and Swiss Quinoa Cups are meatless, gluten-free bites with big flavor. Enjoy for breakfast or a light meal, or as an easy snack!

At least once a day I fight the urge to rip open the refrigerator and shout, Mooo-om, do we have anything to eat?! but refrain from doing so because, well, I’m the Mom!
Seriously though, do you ever have those weeks when you open the cupboard and refrigerator a hundred times, praying they’ll be magically full of the foods you’re craving on the 101st time? I usually try and keep fresh fruit and vegetables in the refrigerator, but sometimes I want something more substantial than a snack and don’t have the patience to make a meal.
Enter Mini Mushroom and Swiss Quinoa Cups! If you’ve been reading IGE for a few years then you know how obsessed I am with mini quinoa cups. Past cup adventures include Ham and Cheese, BLT, and even Pizza! Packed with protein from cooked quinoa and eggs in the mix, they’re fun, filling, and perfect for breakfast, a light lunch, or as a snack.
Plus they’re freezer-friendly. Did I mention completely addicting? I can hardly help myself around these cutie patooties!
This mushroom and swiss version is one of the best.
Quinoa simmered in chicken broth is paired with freshly shredded swiss and parmesan cheeses, and sauted mushrooms spiked with lots of dried thyme and tons of garlic. I’m surprised any of the mushrooms actually made it into the mix as I was shoveling them into my mouth like a heathen straight out of the skillet.
That is to say, they are so darn delicious!
I’ve been eating these cups as snacks but also for breakfast lately. My old standby is 2 over-medium eggs, 3 Jones Dairy Farm sausage links (which I found in bulk at Costco – one of the best moments of my life,) and cauliflower hash browns, but it’s always good to switch things up a bit. Plus, who wouldn’t want to start their day with the magical combination of mushrooms and garlic?
Start by adding 1/2 cup dry quinoa that’s been rinsed and drained to a small saucepan with 1 cup boiling chicken broth. Place a lid on top then turn the heat to medium-low and cook until tender, about 15 minutes, then set aside to cool slightly.
Meanwhile, in a skillet next door, melt 2 Tablespoons butter over medium-high heat then add 8oz chopped mushrooms, 1 chopped shallot, salt and pepper, and then saute until the mushrooms are golden brown and tender, 5-7 minutes. Add 3 cloves minced garlic and 1-1/4 teaspoons dried thyme (garlicky, herby mushrooms – be still my heart!) then saute for another minute. Mushrooms = done! Set ’em aside to cool slightly.
Once the quinoa and mushrooms are slightly cool, add them to a big bowl with 1 cup freshly shredded swiss cheese, 1/4 cup freshly grated parmesan cheese, and 2 eggs + 2 egg whites that have been whisked together.
Mix everything up then scoop into a 24 count mini muffin tin that’s been sprayed to within an inch of its life with nonstick spray. Trust me – spray, spray, spray – there is nothing worse than having these little gems stick to the pan after coming out of the oven!
Bake at 350 degrees for 18-22 minutes, or until light golden brown on top, then cool in the tin before popping out and into your awaiting mouth. Store extras in an airtight container in the fridge for up to five days or cool completely then freeze flat in a Ziplock bag!
To eat the cups from the freezer just place a few on a plate then cover with a paper towel and microwave for 20-40 seconds for a near instant breakfast, lunch, or snack. Enjoy!

Equipment
Ingredients
- 1 cup chicken broth
- 1/2 cup dry quinoa
- 2 Tablespoons butter
- 8 oz mushrooms, chopped
- 1 shallot, chopped
- salt and pepper
- 3 cloves garlic, minced
- 1-1/4 teaspoons dried thyme
- 1 cup freshly shredded swiss cheese
- 1/4 cup freshly shredded parmesan cheese
- 2 whole eggs, whisked
- 2 egg whites, whisked
Directions
- Preheat oven to 350 degrees. Bring chicken broth to a boil in a small saucepan then add rinsed and drained quinoa. Place a lid on top, turn heat down to medium-low, and then simmer until all the broth has been absorbed and quinoa is tender, about 15 minutes. Set aside to cool slightly (can be done ahead of time.)
- Meanwhile, melt butter in a large skillet over medium-high heat then add mushrooms and shallots, season with salt and pepper, and then saute until mushrooms are golden brown and tender, 5-7 minutes. Add garlic and dried thyme then saute for another minute. Set aside to cool slightly (can be done ahead of time.)
- In a large bowl combine cooked quinoa and mushrooms, swiss cheese, parmesan cheese, and whisked eggs then stir to combine. Spray a 24 count mini muffin tin extremely well with nonstick spray then spoon mixture to the top of each cup. Place muffin tin on top of a baking sheet then bake for 18-22 minutes, or until light golden brown on top. Let cool in tins then store in an airtight container in the refrigerator for up to 5 days.
Notes
- To freeze: Place cups on a baking sheet then freeze until solid, and then transfer to a freezer bag. Place frozen cups on a plate then top with a paper towel and microwave for 20-40 seconds to reheat.
Nutrition
Nutritional values are estimates only. Please read our full nutrition information disclaimer.






















These are AMAZING! Any chance you have the nutrition information on them per serving size?
I’m so glad, Becky! I’m sorry, I don’t have nutritional information but recommend Livestrong’s recipe calculator tool if you need that information! http://www.livestrong.com/recipes/create/
I love your quinoa muffins, but only find the calorie info on the ham and cheese. Do you also have the calorie info on the blt cups and the mushroom swiss cups and I’m not finding it? Thanks
Kristin, This recipe looks awesome. However, my wife and I are vegetarians. Could we sub vegetable stock for the chicken broth?
Absolutely!